PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010871-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 545aa    MW: 60676.6 Da    PI: 6.1717
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010871-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  AHYPO_010871-RA  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-11546No hitNo description
CDDcd002024.68E-17666No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.1E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139198.2E-9282368IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RIDPDDYEDQ  60
RAGRIKTISL KKRDDKLSKR KFDSNRVDEG SPDYSQGFQK HIDEDTSNRS SSGSAISNSE  120
SCAQLGSADA SEMTGPAQSI VWDALVPSKK RTCVTRSKQS SVEKLRKDLY TILYEQASQF  180
SVSSEEELIY ESEAPMVSVE IGYGGVLIKH PSSIVREEES EASSLTFDNK FCRADEGYSH  240
PASTLMLNDS KSMSNDLSGS EKGKKLNGEL MQLEPLKREK YDHEKYQILS NRNSPLSHID  300
MSEIVNTDVF CVHLTDGEQQ DLLKYLPDID ISGVSDSLGS IFTNKHFKEN ISSFQHLLAD  360
GVFDSSFSGV PTEDCKVLKR LALTDMTKSK WVDYYNMLKD KKTKESSGDS VRVTEAISSF  420
SGNLYNGKRS RDSQNNIWPE TKAVTRNPKQ VLLKVDGKNK HPLQNEGLRF TRAPSLFTLP  480
TDRSSVMLDS YQFEDESSDE DLLLVPFHGS FPQAEAEFLC PAYSLGSQQA SASSNSIHLS  540
HLRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677131.10.0PREDICTED: GATA transcription factor 26
TrEMBLA0A0K9R9670.0A0A0K9R967_SPIOL; Uncharacterized protein
STRINGXP_010677131.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-122GATA transcription factor 26