PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010941-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 126aa    MW: 14128.8 Da    PI: 8.6618
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010941-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20841134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C+ C+ttkTplWR+gp g+++LCnaCG++yrk++
  AHYPO_010941-RA  8 CADCKTTKTPLWRSGPYGPRSLCNACGIRYRKRK 41
                     ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.0E-15253IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-14549No hitNo description
Gene3DG3DSA:3.30.50.106.8E-17643IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.374838IPR000679Zinc finger, GATA-type
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
PfamPF003208.2E-18840IPR000679Zinc finger, GATA-type
CDDcd002024.42E-14855No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MNEGKKYCAD CKTTKTPLWR SGPYGPRSLC NACGIRYRKR KMAEDKESSS GIMRRDDYYD  60
DNQMNESMKI RCSSYSDYSS SSSSCSPLKK QRSDNENSRS ISRNLGEVEQ AAVLLMSLAC  120
DSIFA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674149.13e-41PREDICTED: GATA transcription factor 16
TrEMBLA0A0K9QV176e-31A0A0K9QV17_SPIOL; Uncharacterized protein
STRINGXP_010674149.11e-40(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-24GATA transcription factor 16