PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011013-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25328.1 Da    PI: 9.7265
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011013-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.1e-222566243
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     r e +snrqvtfskRr g++KKA+EL++LC+ae+a+i+fs+ 
  AHYPO_011013-RA 25 RMEKDSNRQVTFSKRRCGLFKKASELCTLCGAEAAIIVFSPG 66
                     7899************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.0671676IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-311675IPR002100Transcription factor, MADS-box
CDDcd002654.57E-321785No hitNo description
SuperFamilySSF554554.71E-271789IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-181838IPR002100Transcription factor, MADS-box
PfamPF003191.5E-242572IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-183853IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-185374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASSSSMPAS STKKSKGRQK VKMQRMEKDS NRQVTFSKRR CGLFKKASEL CTLCGAEAAI  60
IVFSPGRKPF SFGHPSVDTV IKRFLLSTSL NPEEPEPENP TPQEVIEIID LNANLTILNR  120
ELENEKKKSK SINEVKKANS KKNWWDRELE EFSIGELIRL KTSLEELSKH VIELSKKVMI  180
YNSSIHVNQF PYMAAHYPPM MGCYDAAYVT PNPNVGFMGS RDGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-1517110188Myocyte-specific enhancer factor 2A
3kov_B4e-1517110188Myocyte-specific enhancer factor 2A
3kov_I4e-1517110188Myocyte-specific enhancer factor 2A
3kov_J4e-1517110188Myocyte-specific enhancer factor 2A
3p57_A4e-1517110188Myocyte-specific enhancer factor 2A
3p57_B4e-1517110188Myocyte-specific enhancer factor 2A
3p57_C4e-1517110188Myocyte-specific enhancer factor 2A
3p57_D4e-1517110188Myocyte-specific enhancer factor 2A
3p57_I4e-1517110188Myocyte-specific enhancer factor 2A
3p57_J4e-1517110188Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690727.26e-79PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VIS13e-51A0A2C9VIS1_MANES; Uncharacterized protein
STRINGXP_010690727.15e-71(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-37AGAMOUS-like 62