PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011014-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 484aa    MW: 53423 Da    PI: 5.0336
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011014-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-2260107249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                      rie +snr vtfskRr g++KKA+EL++LC++e+a+i+fs+  k +++
  AHYPO_011014-RA  60 RIEKESNRLVTFSKRRSGLFKKASELCTLCGVEAAIIVFSPGKKAFTF 107
                      89***************************************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-2951110IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.00251111IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-2552122IPR002100Transcription factor, MADS-box
CDDcd002656.83E-3152124No hitNo description
PRINTSPR004043.5E-165373IPR002100Transcription factor, MADS-box
PfamPF003192.6E-2460107IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-167388IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-1688109IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MENNQNIEKS LSSMEINQNI EKDPSTMESN QNTEKNPSPV ESNQKIEKKT KGRQKLPLVR  60
IEKESNRLVT FSKRRSGLFK KASELCTLCG VEAAIIVFSP GKKAFTFGHP SIDGVLNRYL  120
SDNDFLSDPS HYLIGQTSEA VKDDGIKTLS TIIASIRTQY EMEIKRTKDI NNGRKANVES  180
YKWLAVEESK NEKELVQVYE ALARVTKSVY EFYPKNVLEL TAHGAGNHHT PNLLEGQHFV  240
PNNLFGDQSQ NPMAMVPPNL VRGLINFDPS QRMIQAPLME GAFGDPSLSS IRANTIALNL  300
LKADTNVALR FFSNNPVPRG PSDLPNYQNS LLPFPGEYNP MGGSQYGRHP SFEPKTFQPL  360
NPMWGNFEAG LSMPSMFNEL MTMPASTRGP NELMNLPAPP PGGPNGMLTM LMPPLGPNGI  420
DALAPPFNLQ GGFEFGSSSN TNDELELGNQ INGFESGNQC NGFEFGNQSD ENEGFRDDAG  480
EFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-35AGAMOUS-like 62