PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011084-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TCP
Protein Properties Length: 214aa    MW: 23712.5 Da    PI: 10.0773
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011084-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.92.3e-3158168399
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl   k  i++l+ ++ ++ ++++++s+++++++++ g        
  AHYPO_011084-RA  58 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDSTKNDIDKLPPLPIIPGTFTSQGSKQKEVGHDQGGssqvlaqn 151
                      78*************************************************************9999999988888888888888855566555 PP

              TCP  89 ......kaaksaakskk 99 
                            + ++s++ +++
  AHYPO_011084-RA 152 lfpissNTNNSSMLPSQ 168
                      55554322222223333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-2859149IPR005333Transcription factor, TCP
PROSITE profilePS5136928.94559117IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
DVMMILRDKE ESSYNTKQEV GGEQSTKQST QASTSTSTKQ WSSGFKNPRI VRVSRTFGGK  60
DRHSKVCTIK GLRDRRIRLS VPTAIQLYDL QDRLGLNQPS KVVDWLLDST KNDIDKLPPL  120
PIIPGTFTSQ GSKQKEVGHD QGGSSQVLAQ NLFPISSNTN NSSMLPSQNS NPSFMGNNPM  180
LNYYHLEPSN LSLSQLGSLG LVHSNSHRDN HTQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1964118155Putative transcription factor PCF6
5zkt_B3e-1964118155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695237.17e-84PREDICTED: transcription factor TCP17
TrEMBLA0A4D8YNM64e-57A0A4D8YNM6_SALSN; Uncharacterized protein
STRINGXP_010695237.13e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5