PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011085-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 932aa    MW: 105120 Da    PI: 7.7397
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011085-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.2e-06119140325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +++Cr f+r G C +G++C+F+H
  AHYPO_011085-RA 119 RSPCRKFQR-GMCYRGSSCSFSH 140
                      689******.************* PP
2zf-CCCH20.77.2e-07185205526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +Cr+f+r G+Ck+G+ C++ H+
  AHYPO_011085-RA 185 PCRNFLR-GHCKFGSFCRRWHP 205
                      8******.**********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3995481IPR000571Zinc finger, CCCH-type
SMARTSM003560.00125480IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399116143IPR000571Zinc finger, CCCH-type
SMARTSM003560.002117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5121144IPR000571Zinc finger, CCCH-type
SMARTSM003560.012180206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042180207IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4184205IPR000571Zinc finger, CCCH-type
SMARTSM003560.023256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.624256280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164281307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5282305IPR000571Zinc finger, CCCH-type
SMARTSM003560.048283306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4284307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5096912.985728878IPR004274FCP1 homology domain
SuperFamilySSF567849.06E-9729889IPR023214HAD-like domain
SMARTSM005770.0016731860IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MEQSVTERPL SQDQCFSQVY NGVMNSNSTH LDKYQSENWC PKSLTDCDHL RLEKPQIPIC  60
RDNLRGACAR GEYCKFQHSG SVEHDGSRFY QNDRGRLSYR ETNDSDSRTR LSYDGFRSRS  120
PCRKFQRGMC YRGSSCSFSH TESDRFGRST YGSRVEQKVD GAVKVSGFAE GRRDSASGQR  180
RSISPCRNFL RGHCKFGSFC RRWHPDDSVA RSRHDLSSSN PVCREGGRDF TLRASQGHEE  240
PNMHNRSRTK PFFDDLRKRS PCQDFLHGRC YRGDSCVKLH PVREVCLQFT KGRCTNGDSC  300
RYLHGYHAYA SSVLNKNPIG AAGGNSNFSM ENNSNNTVIN QEHDAVKNSN MSLGESKNIE  360
SCVKETKMEP VNNSTSKILD EKGDASLTYG SKCEISGEKI ASFCSPTERH EDFSLWSRPF  420
KRRRSRSRSP FSPKDHIRCR NFRRCDSRID FYRDRGYNVA RFQYNRSSFK YERAAYHANT  480
QHHSKAQATL VHDRSCEASD SKVVLPHGHG VVNQCLQTDP CPNGNDGSNI STVNEKHNAA  540
SATCALQPDC TDQNDKELAT DSLAVDRSQR TVVSSLEDFE SDSIRSCEHH FVFPEVADLT  600
MLVTEENVDV TSNLDRERDE TNAECMPAIK LCSKEREKKH YGSVSCEDAM KEVADALIHG  660
VPGSENNDLE DMVVHDSQHK QQEIGMTDKI GETAESALPT TEDKTLVVGN TVSHSLQASQ  720
ASPRAIIPLS RRKLLVLDVN GILADIVGDY PSRLKPDTIV SGKGVFKRPF CDDFIKCCFE  780
RFDDQSHCTA TGYTTIENRE KPLVLKELKN LWDNNGESLP WKKGTYNETN TVLLDDSPYK  840
ALRNPPYTSI FPYPYSFKDA RDKSLGPGGN IRAYLERLAE AENVQKFIQE NPFGQRPITE  900
ANLSWAFYAK IVGARDVKQQ EEIAKITTSG S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695241.11e-121PREDICTED: uncharacterized protein LOC104907914
RefseqXP_019108247.11e-121PREDICTED: uncharacterized protein LOC104907914
STRINGXP_010695241.11e-121(Beta vulgaris)