PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011111-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 362aa    MW: 39708.4 Da    PI: 7.1024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011111-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16200246455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  AHYPO_011111-RA 200 VHNQSERRRRDRINQKMKALQKLVPNA-----NKTDKASMLDEVIEYLKQLQ 246
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-19194263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.568196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-14200246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18200254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.41E-16201250No hitNo description
SMARTSM003537.5E-17202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSNFEVTELT WENGQLAMHE LGSIFDAPAS TTTTSPTKPT WVHGEGRALD TLESIVHQAT  60
YCNNQQSLDI MSGSAPHQHS AHQTRENVGP SPPSSGLVKK RTHSQSENCV VRHKNDHEMS  120
ASASENTPFC KDKNKENSTN GTTMMTWASF ESPRSFTRTK TTTDEDSACH GGSENQDEER  180
DTKGETGRSS TTRKGRAAAV HNQSERRRRD RINQKMKALQ KLVPNANKTD KASMLDEVIE  240
YLKQLQAQIH MMANARFMPQ FMMPLEMQQH FNQMSLLARM GIGAGLGMGL GATMSAMHPA  300
NPTISQMMNP TQVANSVFVP PAFVVPQIIS AADEQHNPAD PGTSRSAHSQ DPYCTLLAQA  360
I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102KKRTH
2204209ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021761552.11e-169transcription factor PIF7-like
TrEMBLA0A0K9QNE11e-154A0A0K9QNE1_SPIOL; Uncharacterized protein
STRINGXP_010678431.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-42bHLH family protein