PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011135-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 358aa MW: 40379.1 Da PI: 6.7857

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011135-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kv ++++ + ++i evd++k+ePwdLpk++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ AHYPO_011135-RA 16 LPPGFRFHPTDEELITHYLSFKVVDTNFCA-RAIGEVDLNKCEPWDLPKRAKMGEKEWYFFCLRDRKYPTGLRTNRATEAGYWKATGKDKEIYR 108 79***********************988.89***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkg+k++Wvmheyrle AHYPO_011135-RA 109 -GKSLVGMKKTLVFYKGRAPKGVKSNWVMHEYRLE 142 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.567	16	166	IPR003441	NAC domain
Pfam	PF02365	4.2E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MENMVVLDGE QESMDLPPGF RFHPTDEELI THYLSFKVVD TNFCARAIGE VDLNKCEPWD 60 LPKRAKMGEK EWYFFCLRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGV KSNWVMHEYR LEGKSSLQNL PSNAKNEWVI CRVFQKSASG KKIPFSTLIQ 180 SNSSGIEFNP STNLPPLMES SPYNTHHVSC FSNSMETAQP SHSHYQPIDQ PSFNGLNNHP 240 YTSIPLNPGD NNSYYTRFGG LNPYFPPQTG PYSGPYSDQR ILQAIIENNG GELKQSMKTE 300 VFNYSASQDT CLSSDLNNAE ISSVVSNHDI SRRPFDDLDG PSTSVGPLDM DSIWNNY*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MENMVVLDGE QESMDLPPGF RFHPTDEELI THYLSFKVVD TNFCARAIGE VDLNKCEPWD  60
LPKRAKMGEK EWYFFCLRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYKGRAPKGV KSNWVMHEYR LEGKSSLQNL PSNAKNEWVI CRVFQKSASG KKIPFSTLIQ  180
SNSSGIEFNP STNLPPLMES SPYNTHHVSC FSNSMETAQP SHSHYQPIDQ PSFNGLNNHP  240
YTSIPLNPGD NNSYYTRFGG LNPYFPPQTG PYSGPYSDQR ILQAIIENNG GELKQSMKTE  300
VFNYSASQDT CLSSDLNNAE ISSVVSNHDI SRRPFDDLDG PSTSVGPLDM DSIWNNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-55	14	172	15	171	NAC domain-containing protein 19
4dul_B	3e-55	14	172	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	2e-63	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	2e-63	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678483.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-133	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1B2RWC9	0.0	A0A1B2RWC9_9CARY; NAC transcription factor 15
STRING	XP_010678483.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-135	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	AHYPO_011135-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]