PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011138-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 7895.64 Da PI: 11.1568

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011138-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.7	1.5e-23	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e++s rqvt+skRr+gilKKA+EL +LCd++v +++fs+tgk AHYPO_011138-RA 10 RLESSSSRQVTYSKRRTGILKKAKELAILCDIDVVLLMFSPTGK 53 679***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	9.16E-23	1	58	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.165	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-28	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.4E-22	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGRVKLKIMR LESSSSRQVT YSKRRTGILK KAKELAILCD IDVVLLMFSP TGKPTILLGE 60 RRYILLLVF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019105212.1	8e-32	PREDICTED: agamous-like MADS-box protein AGL65 isoform X4
Swissprot	Q7X9I0	2e-26	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A3T0QHF9	2e-29	A0A3T0QHF9_9ERIC; AGAMOUS-LIKE PROTEIN 65
TrEMBL	A0A426X4K0	3e-30	A0A426X4K0_ENSVE; Uncharacterized protein
STRING	XP_010678493.1	4e-30	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	7e-29	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	AHYPO_011138-RA

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]