PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011143-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 454aa MW: 49939.2 Da PI: 6.2395

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011143-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	117	177	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s AHYPO_011143-RA 117 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 177 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	114	174	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	119	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	121	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	123	159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MMDPAFKLFG KTIPVCGEND RDGDESQGCD SIESSNSDHH DVDADFNDNK EEHPDFQESA 60 EGTVEIDQSD DPAPQSDEDS TNLPTMSENN GNKRESDSDE KESNDPKNSQ QKTLKKPDKI 120 LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASRY 180 CHITVSEALQ AARLDVSNGV HHPGLKSNGT VLTFGPDNSL CESISPVLKI GDKANTRNGF 240 HNIDQVVCVS KENGDDGSSG STVTTSSIEE KKAGLQGQIK HNMNGFSNQM PCFQWPYVWN 300 PAVPLQPFCP SAFPAMPFYP PPYWNGAIPW NFPWVPPVSP SQKTQGSNPN SPTLGKHTRD 360 GETHNQSENE RSPKKPTVLV PKTLRIDDPD EAAKSSIWTT LGIKKGDSLS KGGFFNSLPS 420 KKGDEKVHQM DAPPSLKANP AALCRSMNFQ ERA*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MMDPAFKLFG KTIPVCGEND RDGDESQGCD SIESSNSDHH DVDADFNDNK EEHPDFQESA  60
EGTVEIDQSD DPAPQSDEDS TNLPTMSENN GNKRESDSDE KESNDPKNSQ QKTLKKPDKI  120
LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASRY  180
CHITVSEALQ AARLDVSNGV HHPGLKSNGT VLTFGPDNSL CESISPVLKI GDKANTRNGF  240
HNIDQVVCVS KENGDDGSSG STVTTSSIEE KKAGLQGQIK HNMNGFSNQM PCFQWPYVWN  300
PAVPLQPFCP SAFPAMPFYP PPYWNGAIPW NFPWVPPVSP SQKTQGSNPN SPTLGKHTRD  360
GETHNQSENE RSPKKPTVLV PKTLRIDDPD EAAKSSIWTT LGIKKGDSLS KGGFFNSLPS  420
KKGDEKVHQM DAPPSLKANP AALCRSMNFQ ERA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761615.1	0.0	cyclic dof factor 3-like isoform X1
TrEMBL	A0A0K9R752	0.0	A0A0K9R752_SPIOL; Uncharacterized protein
STRING	XP_010678503.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-95	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	AHYPO_011143-RA