PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011164-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 175aa    MW: 20229.4 Da    PI: 9.9717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011164-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.2e-1590170488
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      + ++s++ + g + lp kf++e++ k e+s  + + de+g +W+++l  +k++++++++  W++  + ng ++gD +vF+l+++ 
  AHYPO_011164-RA  90 IVVKSYTERWGVMDLPSKFCKENDVK-ENSSGVLMIDERGDTWKLTL--KKHGKKIYIG-KWRHLHRHNGYEVGDLLVFELISSG 170
                      567899999999***********755.55669***************..******9999.8*******************99743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-7360IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-1386174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1486175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.50687175IPR003340B3 DNA binding domain
CDDcd100175.82E-1087175No hitNo description
SMARTSM010195.6E-687175IPR003340B3 DNA binding domain
PfamPF023622.4E-1190171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAKKSSCFFQ PLIPGFLSNF SIPRSFHKQL QVQDMQDKNE VVLRAKQGKT WEIKVDHQQG  60
FKRVADIYKA CSESGSNASF KPRGYPYCRI VVKSYTERWG VMDLPSKFCK ENDVKENSSG  120
VLMIDERGDT WKLTLKKHGK KIYIGKWRHL HRHNGYEVGD LLVFELISSG ELPVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672239.21e-36PREDICTED: B3 domain-containing protein REM9-like
STRINGXP_010672239.13e-38(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-13B3 family protein