PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011169-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 374aa    MW: 41326.2 Da    PI: 6.6346
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011169-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10181239563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  AHYPO_011169-RA 181 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 239
                      9*********************************************9998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-16177241IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932179242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-10181235No hitNo description
PfamPF001709.1E-9181235IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-11181232No hitNo description
CDDcd147034.92E-24182231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDKEKLPGGG GLPPTATGRF SPFPPCSSSS SPSPQQQPSQ TTSFSHDLSR MPDNPPKNMG  60
HRRAHSEILT LPDDISFDSD LGVVGGGPDG PSLSDETEED LFSMYIDMDK VNSATSAEIQ  120
VGETSSGLGP RPRHQHSQSM DGSMTIKPEM LVSGGEEASP ADAKKAMSAA KLAELALIDP  180
KRAKRIWANR QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLTAENS  240
ELKLRLQTME QQVHLQDALN ETLKDEIQHF KMLTGQAMSN GGSMMNFPTS FTGSQPFYPN  300
NQAMHNLLTT QQFQQLQIHS QKHQHQYQQH QLHHQLQQQQ DLTQLSQLSG DFKMRPSMPL  360
LKENASESRV PKD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672248.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-144POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A0K9RRS71e-173A0A0K9RRS7_SPIOL; Uncharacterized protein
STRINGXP_010672248.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-125bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]