PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011186-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 363aa    MW: 41510.6 Da    PI: 4.4158
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011186-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k y+++++e+++++iswse+++sfv++d++ef++++Lp yFkh+nf+SF+RQLn+YgF+kv++++         weF+++ F kg+k+ll+
  AHYPO_011186-RA  16 FLIKCYDMVDTESTDNVISWSESNDSFVIWDMTEFSRDLLPAYFKHRNFSSFMRQLNIYGFRKVDTDR---------WEFANEGFIKGQKHLLQ 100
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k+
  AHYPO_011186-RA 101 NIKRRKH 107
                      *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3712105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-5512105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3312105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.2E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAQGKSIGSG ANLAPFLIKC YDMVDTESTD NVISWSESND SFVIWDMTEF SRDLLPAYFK  60
HRNFSSFMRQ LNIYGFRKVD TDRWEFANEG FIKGQKHLLQ NIKRRKHPQN TVQKNQQQDQ  120
VLSVPDEVDY ISLQKEVEIL KTDKSTLMQE LVKLRERHEL SQNNLLLLRE RLQGMENNQQ  180
QLLSFLVMIM QSPGLLAQLF QPKENSWRVA EAGKIVLNDD AVIVRYQPLP DSAPSPSLAP  240
SLDPDKTANH DMSFDRVKDF LMNFDFPSSP LDESFLSAEN YGPIVPTDEF DLDKLEQFLL  300
SSPDRDDTKQ DEEETKSALH GIEAENCEMV DSSSCFGFNE DSSSLEHLTE KMECLSPGKD  360
FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24710516129Heat shock factor protein 1
5d5v_B7e-24710516129Heat shock factor protein 1
5d5v_D7e-24710516129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843219.11e-174heat stress transcription factor A-8
TrEMBLA0A0K9QQP21e-173A0A0K9QQP2_SPIOL; Uncharacterized protein
STRINGEMJ239511e-111(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.17e-73heat shock transcription factor A8