PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011234-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 895aa MW: 99776.8 Da PI: 5.4116

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011234-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.6e-29	563	614	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ AHYPO_011234-RA 563 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 614 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.177	548	634	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-26	566	614	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-23	786	876	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-25	791	873	No hit	No description
PROSITE profile	PS51745	21.354	794	876	IPR000270	PB1 domain
SMART	SM00666	1.7E-22	794	876	IPR000270	PB1 domain
CDD	cd06407	9.38E-32	795	875	No hit	No description
Pfam	PF00564	3.1E-17	795	875	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MEYSFSHKEK GNSFWACTSS QSSDIPMGVD NEALNSTEDQ FVNMSEMMSL DGYDSWCNNP 60 SSNEQLFASY MYSSLPSIPP NYTYDSQLSA FPTSDNGCTT LNLYGSPLSY TDKIVFSHKD 120 SQLNPLVGSL DDSNSWSKQE NGSALSQNLV PRPFGHSLPE KLLRALSLFK ESSGGGILAQ 180 VWAPVRSEDH YKLSTCEQPY LLDQMLVGYR EVSRSYTFSI EQKPDSFPGL PGRVFISKMP 240 EWTSNVSYYN AAEYLRVQHA VNHEVRGSVA LPVFTPEGSC CAVLELVTVR EKSNFDLEME 300 SHLSMNQKTA LAEITDVLRA VCHAHRLPLA LTWIPCTFEE EDGHQIFQIQ VKDNSFNLNK 360 KSVLCIEESA CYVNDKDMQE FVHACAEHFL EEGQGVAGKA LQSNLPFFFP DVKSYHISEY 420 PLVQHARKFG LNAAVAIRLR STYTGVDDYI LEFFLPLNIT GNKEQQLLLD SLAGTMQRLC 480 RSLRTVSDAE LLGSSDSKGE LFGVSQSFFT KDLPLKSSSD SFTMDIQLAM DRSSIRNCSS 540 KEDGPFEQAS GSSRPMEKKR STAEKTVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ 600 HGISRWPSRK INKVNRSLRK IQTVLDSVEG VEGGLQFDPT TGELVPARSV VRDPDAHKTL 660 FMSSKCIAAK KCEISDFKVR NDSYISGNQA VQGLSVLDSE NRKQVEKKSS NSVEEMRKSD 720 FNMGLRSDRN QYCHLRAVQS EMENDDGLIE HNQATSSSMT DSSNASGSLS SSPNSNDKQR 780 QPKDRTSNES SGSRITIKAT YNEDTIRFKF EPSAGCLHLY EEVATRFKIQ RGTFQLKYLD 840 DEEEWVMLVS DSDLQECLEI MEYMGKNSLK FLVRDLAFGM GSSAGSNGFL PGSC*

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MEYSFSHKEK GNSFWACTSS QSSDIPMGVD NEALNSTEDQ FVNMSEMMSL DGYDSWCNNP  60
SSNEQLFASY MYSSLPSIPP NYTYDSQLSA FPTSDNGCTT LNLYGSPLSY TDKIVFSHKD  120
SQLNPLVGSL DDSNSWSKQE NGSALSQNLV PRPFGHSLPE KLLRALSLFK ESSGGGILAQ  180
VWAPVRSEDH YKLSTCEQPY LLDQMLVGYR EVSRSYTFSI EQKPDSFPGL PGRVFISKMP  240
EWTSNVSYYN AAEYLRVQHA VNHEVRGSVA LPVFTPEGSC CAVLELVTVR EKSNFDLEME  300
SHLSMNQKTA LAEITDVLRA VCHAHRLPLA LTWIPCTFEE EDGHQIFQIQ VKDNSFNLNK  360
KSVLCIEESA CYVNDKDMQE FVHACAEHFL EEGQGVAGKA LQSNLPFFFP DVKSYHISEY  420
PLVQHARKFG LNAAVAIRLR STYTGVDDYI LEFFLPLNIT GNKEQQLLLD SLAGTMQRLC  480
RSLRTVSDAE LLGSSDSKGE LFGVSQSFFT KDLPLKSSSD SFTMDIQLAM DRSSIRNCSS  540
KEDGPFEQAS GSSRPMEKKR STAEKTVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ  600
HGISRWPSRK INKVNRSLRK IQTVLDSVEG VEGGLQFDPT TGELVPARSV VRDPDAHKTL  660
FMSSKCIAAK KCEISDFKVR NDSYISGNQA VQGLSVLDSE NRKQVEKKSS NSVEEMRKSD  720
FNMGLRSDRN QYCHLRAVQS EMENDDGLIE HNQATSSSMT DSSNASGSLS SSPNSNDKQR  780
QPKDRTSNES SGSRITIKAT YNEDTIRFKF EPSAGCLHLY EEVATRFKIQ RGTFQLKYLD  840
DEEEWVMLVS DSDLQECLEI MEYMGKNSLK FLVRDLAFGM GSSAGSNGFL PGSC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682023.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0J8C6U7	0.0	A0A0J8C6U7_BETVU; Uncharacterized protein
STRING	XP_010682023.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_011234-RA

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]