PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011258-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 522aa MW: 57601.7 Da PI: 6.8628

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011258-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	359	417	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l l+ +a l++++ AHYPO_011258-RA 359 KRVKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQN 417 899***********************************************999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.4E-19	355	419	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	357	420	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.86E-11	359	410	No hit	No description
Pfam	PF00170	4.1E-9	359	417	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-11	359	416	No hit	No description
CDD	cd14703	1.35E-23	360	411	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MEGSDETGVM RRNQSSFENC SSSANKQSSS FQMGINGQMQ NLTVNVMENN SSKRPAGIPP 60 SHPHSHFVSP KNIPQQAGGN QNFSMASTHS RSLSQSSFFS FDNLPPLSPS MFRDSGGLGS 120 SSDVSIEDKE ACGFRGASGL YVSEGLPPRR GHRRSSSDVP LGFASMGQGL STQEKKEKPV 180 QLVLKRESDW GGTGNEGGTE RKSEGEVVDD LFSAYMNLDN IDVLHSSSME DKDLDSRVSG 240 TRTNDSSENE VDSNIAGNSR NSAEKRSKRC APGDIVPGPR HFRSLSMDSF MGNLNFSDES 300 PKLPPSTWTR SAQHSPSNSF DENTDKFSLE FSNGDFSPAE LKKIMASDKL AEIAMADPKR 360 VKRILANRQS AARSKERKMR YIAELEHKVQ TLQTEATTLS AQLTLLQRDS AGLTNQNNEL 420 RFRLQSMEQQ AQLRDALNEA LTAEVQRLKL VTAEIRGDTP SNCLPQQMMT NNQMLQMQPS 480 QYMYQLQQQN DQKQQQAPQK IQEPQQSHSI QPQKDTGTTK S*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MEGSDETGVM RRNQSSFENC SSSANKQSSS FQMGINGQMQ NLTVNVMENN SSKRPAGIPP  60
SHPHSHFVSP KNIPQQAGGN QNFSMASTHS RSLSQSSFFS FDNLPPLSPS MFRDSGGLGS  120
SSDVSIEDKE ACGFRGASGL YVSEGLPPRR GHRRSSSDVP LGFASMGQGL STQEKKEKPV  180
QLVLKRESDW GGTGNEGGTE RKSEGEVVDD LFSAYMNLDN IDVLHSSSME DKDLDSRVSG  240
TRTNDSSENE VDSNIAGNSR NSAEKRSKRC APGDIVPGPR HFRSLSMDSF MGNLNFSDES  300
PKLPPSTWTR SAQHSPSNSF DENTDKFSLE FSNGDFSPAE LKKIMASDKL AEIAMADPKR  360
VKRILANRQS AARSKERKMR YIAELEHKVQ TLQTEATTLS AQLTLLQRDS AGLTNQNNEL  420
RFRLQSMEQQ AQLRDALNEA LTAEVQRLKL VTAEIRGDTP SNCLPQQMMT NNQMLQMQPS  480
QYMYQLQQQN DQKQQQAPQK IQEPQQSHSI QPQKDTGTTK S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670890.1	0.0	PREDICTED: transcription factor VIP1
TrEMBL	A0A0K9QB30	0.0	A0A0K9QB30_SPIOL; Uncharacterized protein
STRING	XP_010670890.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-104	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_011258-RA