PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011268-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

M-type_MADS

Protein Properties

Length: 78aa MW: 8721.18 Da PI: 10.7449

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011268-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.3e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly++s+ AHYPO_011268-RA 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSN 59 8***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.202	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.4E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.94E-37	2	61	No hit	No description
SuperFamily	SSF55455	9.68E-29	2	67	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.7E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFSNS 60 SQFFPQISSM LENVKYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-17	1	61	1	61	MEF2C
5f28_B	2e-17	1	61	1	61	MEF2C
5f28_C	2e-17	1	61	1	61	MEF2C
5f28_D	2e-17	1	61	1	61	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019103805.1	2e-36	PREDICTED: MADS-box transcription factor 27-like isoform X5
Refseq	XP_019103807.1	1e-36	PREDICTED: MADS-box transcription factor 27-like isoform X6
Refseq	XP_021851678.1	6e-36	MADS-box transcription factor 23-like isoform X1
Refseq	XP_021851735.1	6e-36	MADS-box transcription factor 23-like isoform X2
Swissprot	A2RVQ5	1e-33	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A3N7EI90	8e-35	A0A3N7EI90_POPTR; Uncharacterized protein
TrEMBL	W9RX21	1e-34	W9RX21_9ROSA; MADS-box transcription factor 27
STRING	XP_010671232.1	4e-35	(Beta vulgaris)
STRING	evm.model.supercontig_177.14	7e-36	(Carica papaya)
STRING	XP_010104581.1	2e-35	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	6e-36	AGAMOUS-like 16

Link Out ? help Back to Top
Phytozome	AHYPO_011268-RA

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]