PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011324-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 266aa MW: 29692.8 Da PI: 6.6616

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011324-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.6	9.8e-37	10	65	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s AHYPO_011324-RA 10 PTCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRS 65 57**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-23	7	59	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.621	10	64	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	10	64	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	12	48	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MERGWREMSP TCPRCGSSNT KFCYYNNYSL TQPRYFCKGC RRYWTKGGSL RNVPVGGGCR 60 KSRRSRPSTL RLTIPTSNQR SNNTSIYSNS HHTHQDELNG HSSNPPTIDL AVVYANFLNQ 120 KPQNCTNNDQ MIQTIDDFSS IPDATTIVPT SQIILQNNDH DSLYSQGVLP LPELINDTNN 180 TYSVNQQNQV LFGTEELGLP MLPGESLIHH DHHHDEVVPP WSGNSTVVGF QDFGSDSQLS 240 NMFNTTCWSP LDLPGFETSS SSSKL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677728.1	1e-86	PREDICTED: dof zinc finger protein DOF3.5-like
STRING	XP_010677728.1	5e-86	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	7e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_011324-RA