PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011351-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 322aa MW: 35836.6 Da PI: 8.3959

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011351-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.5	2.1e-36	51	106	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +alkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ AHYPO_011351-RA 51 EALKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 106 689***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	50	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.5E-32	52	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.559	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGLSSKQVSS DRHGWNQALL QSNTLELPKS PSLKRQASQI QQEQQQQTQV EALKCPRCDS 60 TNTKFCYYNN YNKSQPRHFC KACKRHWTKG GTLRNVPVGG GRKNKRLKTS NPGTKTASKG 120 HNTTTNTTMT TTTNTTTKNT NDNIKLLLQN QQHPSKFSLP LGASPLVGFE QKNFSEAFYQ 180 TLVRQPPCSL PEPSITFNKG LNDGIFLGSS HSIPQNSNDQ DHLQFPYSNL GSFESNPCSI 240 SSSNLYNYTG DQANGLEETV INSLNNTSSS SISDHHQPWT TSNCGIDMSN NWGWDDFDKF 300 VSVEPHLSMP WDETDIKLPE P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686557.1	1e-141	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A0K9R3V0	1e-128	A0A0K9R3V0_SPIOL; Uncharacterized protein
STRING	XP_010686557.1	1e-140	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_011351-RA