PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011404-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 513aa    MW: 56274 Da    PI: 7.1082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011404-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-11154178226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C +++ t tCk+Gd+CkF H+
  AHYPO_011404-RA 154 GEKDCTHYMLTRTCKFGDTCKFDHP 178
                      7889********************8 PP
2zf-CCCH31.33.4e-10204230127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++f++t  Ck+G +CkF+H++
  AHYPO_011404-RA 204 PGEPDCPYFLKTQKCKFGQNCKFNHPQ 230
                      5789*********************97 PP
3zf-CCCH40.54.5e-13250274327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++lC+f+++tG Ck+G++Ck++H++
  AHYPO_011404-RA 250 EPLCSFYMKTGNCKFGASCKYHHPK 274
                      79*********************96 PP
4zf-CCCH40.35.4e-13326350226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C+f+++tG CkyG++C+++H+
  AHYPO_011404-RA 326 GEVDCPFYMKTGSCKYGANCRYNHP 350
                      5789********************9 PP
5zf-CCCH39.21.2e-12400424226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++ +C +++rtG+Ck+GdrCkF+H+
  AHYPO_011404-RA 400 GHTECEHYMRTGECKFGDRCKFHHP 424
                      6789********************8 PP
6zf-CCCH39.96.8e-13452476327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C+f+++tGtC+yG +CkF H+p
  AHYPO_011404-RA 452 VQNCPFYMKTGTCSYGINCKFDHPP 476
                      568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469152180IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-9154178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5154179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4158177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925203231IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-5203230IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-8205230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6208234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5209231IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446247275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6250275IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5252273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432324352IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-8324351IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10326350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5328350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5330349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6396425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464398426IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6398425IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10400424IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5404423IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7449476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094449477IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10452476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5452476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5455474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MANHLYGHHK PISGIYNSST RSAIEPYLPE TSSIASRYLS SYPTDSYSPS SEHSALFRYS  60
ADCLSHSDML GLGSGTAAAG SRSILSTPTS GSLWPSFDVS NTLSKRPSEA LFNHSILGAN  120
MVGYNEAWLT PDSLPKRRRL ESASLLPVYP QRPGEKDCTH YMLTRTCKFG DTCKFDHPIW  180
VPAGGIPDWK ESPPVPFESH PERPGEPDCP YFLKTQKCKF GQNCKFNHPQ DKLDTSGKSE  240
ASNLPERPSE PLCSFYMKTG NCKFGASCKY HHPKDIQVSL NGQTENGVQT QSMDDLGSDG  300
DENAVKPLTS NPPSSYNTKG LPIRSGEVDC PFYMKTGSCK YGANCRYNHP DRIGHAVLPS  360
LGDLNVGLVN PAASILQNLQ PGFAPTMFGQ VPVMYPQRPG HTECEHYMRT GECKFGDRCK  420
FHHPIYRSAP TTKQTEQNVK LTLAGLPRRE GVQNCPFYMK TGTCSYGINC KFDHPPPGEV  480
MASTGQDSST NAKELEELQG NEEKEGNVAT AE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139KRRRL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854330.10.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_021854331.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-168C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0K9QLX90.0A0A0K9QLX9_SPIOL; Uncharacterized protein
STRINGXP_010693153.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-170floral homeotic protein (HUA1)