PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011550-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 278aa    MW: 30157.3 Da    PI: 6.6286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011550-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13213258655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k+Lq
  AHYPO_011550-RA 213 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKNLQ 258
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.71207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16210270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.90E-13211262No hitNo description
Gene3DG3DSA:4.10.280.102.7E-16212272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10213258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQDTAGGGVG GNELSRASGL ARFRSAPATW LDALLEDDDS LKLSGPQHHH HHHQGGLTQL  60
LTSGTTTSTG PTPTDPTPPT RPTPSYISAD PGYFESSGSQ QPSSNSTNTV AFQRMNSSPA  120
EFLSGNIDGY FASFGIPSTY DYVGGSSSSI DVLSPSGKRL RENDADQTQR RGEQSGQLST  180
ASSLVELEME KLLEDSVPCR VRAKRGCATH PRSIAERVRR TRISDRIRKL QELVPNMDKQ  240
TNTADMLEEA VEYVKNLQKQ IQELTEQQKN CKCMAKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767187.11e-140transcription factor bHLH81-like
SwissprotQ9C8P82e-72BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0K9QRI51e-133A0A0K9QRI5_SPIOL; Uncharacterized protein
STRINGXP_010682704.11e-133(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-60bHLH family protein