PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011588-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 728aa    MW: 79377.6 Da    PI: 5.6633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011588-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  AHYPO_011588-RA 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.0911973IPR017930Myb domain
TIGRFAMsTIGR015577.9E-172271IPR006447Myb domain, plants
SMARTSM007177.3E-132371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-82464IPR009057Homeodomain-like
PfamPF002493.0E-132467IPR001005SANT/Myb domain
CDDcd001671.38E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MENYSSGEEL IVKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEAQVKG VPIGQAIDIE IPPPRPKRKP SNPYPRKTGA ISSPNTQVGA  120
KDPAHTVDNV VDLEKGQLPE EPNPEETDGS NKCTEALSLF QEAPSALEAT FSEKPATAVG  180
SARNLSDFKE FVPMTKPLIN NETSESNAAD GHNWDHKTDK PDCVEMVQNN SEYETIAAKT  240
FPRHAPVQIL EGSLASCSQG LSSDVSYQEP VFHQMGIPSQ PALISNPTAS AAVESQTSTS  300
RSTNHQMFPC FHPPFNPLPN TQEGYSSFQQ MSSTFSSMIV SALLQNPAAH AAASFAASFL  360
PPCANIENPV NSAPVHSGGF PPRPMNNPVP SVTAIAAATV AAATAWWAAH GMFPLCAPLH  420
TGFSFPPAST TAPLANFGQT PTANEREENS FQHPGSPVQQ PKQELSEALQ LQQQSASKSP  480
ATSSSGSGNP SNAKVDSEVV ANNNENVSAA SEEKDTNKGK SKKQVDRSSC GSNTPSGSDI  540
ETDALAKNDD GKEEDKEPDV SRAASESGNR RNRILGNLND SWKEVSEGGR LAFQALFSRD  600
RLPQSFSPPE FLNGMRQELN GITVEDNRLN VAQSNDTTQL DLNRNTWESC SNEQVLERNN  660
ELKEEENHKG LLTFSHDQGK LKTNRTGFKP YKRCSVEARE SRVLNSSSPE QEKCSKRLRL  720
EGEAASI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3712872e-98AY371287.1 Mesembryanthemum crystallinum circadian clock associated1 (CCA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687317.10.0PREDICTED: protein LHY isoform X1
RefseqXP_019106653.10.0PREDICTED: protein LHY isoform X1
TrEMBLA0A0K9QPN90.0A0A0K9QPN9_SPIOL; Uncharacterized protein
STRINGXP_010687317.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-49MYB_related family protein