PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011595-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 271aa    MW: 30740.8 Da    PI: 10.3601
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011595-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-163782148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T++Ed+l+++++++lG++ W+ Ia +++ gRt++++k++w+++l
  AHYPO_011595-RA 37 RGNITPDEDDLIIRLHALLGNR-WSIIAGRLP-GRTDNEIKNYWNTHL 82
                     7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.55E-211890IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-111843IPR009057Homeodomain-like
PROSITE profilePS500904.1471831IPR017877Myb-like domain
PROSITE profilePS5129426.7183286IPR017930Myb domain
SMARTSM007173.7E-163684IPR001005SANT/Myb domain
PfamPF002494.0E-153782IPR001005SANT/Myb domain
CDDcd001679.86E-124182No hitNo description
Gene3DG3DSA:1.10.10.601.5E-224482IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGLLRCG KSCRLRWMNY LRPDIKRGNI TPDEDDLIIR LHALLGNRWS  60
IIAGRLPGRT DNEIKNYWNT HLSKRLLSQG TDPDTHKKLS ESELKNLAKN SNNKRCTKSS  120
TCTKRRKLDE QGTNKDDVGQ VGEKTKIHSP KPIRVRPVCS LTRDNSNKSL ESNNNLSNNT  180
SISSSSQTQT RTETQNQTLI QTHMLNMPWV PSYSTSMENN VFDDYHHGMM MTIGSSSSCG  240
DSKVNIDFMQ PHNEEKKTNI KERKNARMKI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-19188640108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695048.11e-96PREDICTED: myb-related protein 308
TrEMBLA0A2P9J4P65e-68A0A2P9J4P6_FAGTA; MYB13 transcription factor
STRINGXP_010695048.14e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.15e-50myb domain protein 7