PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011663-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YB
Protein Properties Length: 158aa    MW: 18222.2 Da    PI: 6.8567
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011663-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.51.1e-5451146297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy++plk yl++yre+eg
  AHYPO_011663-RA  51 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSSLGFDDYANPLKRYLNRYREFEG 144
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      e+
  AHYPO_011663-RA 145 ER 146
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-5245155IPR009072Histone-fold
SuperFamilySSF471131.04E-3953151IPR009072Histone-fold
PfamPF008085.8E-2856120IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.6E-1984102No hitNo description
PROSITE patternPS00685087103IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.6E-19103121No hitNo description
PRINTSPR006155.6E-19122140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVDNITSYSN PSTILHNYNP TLTSSSSHQQ HDHHNLYHHD HHDDQRSGLI KEQDRLLPIA  60
NVGRIMKQIL PPNAKISKEA KETMQECVSE FISFVTGEAS DKCHKEKRKT VNGDDICWAL  120
SSLGFDDYAN PLKRYLNRYR EFEGERVANQ NKERERD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4650141192Transcription factor HapC (Eurofung)
4g92_B8e-4650141192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746444.14e-87nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-65NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0K9QRK11e-82A0A0K9QRK1_SPIOL; Uncharacterized protein
STRINGXP_010684402.11e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-62nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]