PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011703-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 477aa MW: 50637.3 Da PI: 10.0374

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011703-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.1	5.8e-16	399	449	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe++v++L++eN++L+k+ e+ ++ AHYPO_011703-RA 399 RRQRRMIKNRESAARSRARKQAYTMELEQEVQKLKEENQDLRKKQAEIIEM 449 79****************************************987776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	2.88E-7	239	294	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-15	393	446	No hit	No description
SMART	SM00338	1.2E-14	395	460	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.599	397	446	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.88E-11	399	447	No hit	No description
CDD	cd14707	8.10E-26	399	453	No hit	No description
Pfam	PF00170	4.1E-14	399	449	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	402	417	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MGSNCNINFS DGGAGGSGRP PGSGNFGLTR QSSIYSLTFD ELQNTLGGMG KDFGSMNMDE 60 LLKNIWSAEE TQSMATGSGA AAMAAAAAAV ANMGQDVGNS GGYLQRQGSL TLPRTLSQKT 120 VDEVWKDIAK EFNGGKDGGG GSNVPQRQQT LGEITLEEFL VRAGVVREDA QVVGKPNNVP 180 GVGIFGDFAQ PDHNHSNSNS GFGINFQQPG RGMDLIGNRI SETNHQMASL QSANLPLNVN 240 GVRTSQQQAA QVQLSQQQQQ QQLQQQLQQQ QQQQQQQQQQ QPLFPKQSTV SYGSAITLSN 300 SSPLGNAGMR GGMVGLADPG LNSNLVQSGA NQGGAGLGMV GLGGGGTIGV PAGSPAALSS 360 DGIARSNGDS SSVSPVPYMF NGGLRGRRGL GTVDKVVERR QRRMIKNRES AARSRARKQA 420 YTMELEQEVQ KLKEENQDLR KKQAEIIEMQ KNQVMEMMNA QSGPRKKLRR TQTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MGSNCNINFS DGGAGGSGRP PGSGNFGLTR QSSIYSLTFD ELQNTLGGMG KDFGSMNMDE  60
LLKNIWSAEE TQSMATGSGA AAMAAAAAAV ANMGQDVGNS GGYLQRQGSL TLPRTLSQKT  120
VDEVWKDIAK EFNGGKDGGG GSNVPQRQQT LGEITLEEFL VRAGVVREDA QVVGKPNNVP  180
GVGIFGDFAQ PDHNHSNSNS GFGINFQQPG RGMDLIGNRI SETNHQMASL QSANLPLNVN  240
GVRTSQQQAA QVQLSQQQQQ QQLQQQLQQQ QQQQQQQQQQ QPLFPKQSTV SYGSAITLSN  300
SSPLGNAGMR GGMVGLADPG LNSNLVQSGA NQGGAGLGMV GLGGGGTIGV PAGSPAALSS  360
DGIARSNGDS SSVSPVPYMF NGGLRGRRGL GTVDKVVERR QRRMIKNRES AARSRARKQA  420
YTMELEQEVQ KLKEENQDLR KKQAEIIEMQ KNQVMEMMNA QSGPRKKLRR TQTGPW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	140	GGKDGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716588.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-123	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	B5QTD2	0.0	B5QTD2_BETVU; ABA-responsive element binding protein 1
STRING	XP_010685236.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-100	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	AHYPO_011703-RA

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]