PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011707-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Dof
Protein Properties Length: 369aa    MW: 39021.9 Da    PI: 8.8748
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011707-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.5e-3977135361
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGG+lrnvP+Ggg+rknk+ 
  AHYPO_011707-RA  77 QQNLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGTLRNVPIGGGCRKNKTI 135
                      7899****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-2676133IPR003851Zinc finger, Dof-type
PfamPF027015.7E-3378134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.44180134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIQELLGGGS VPNGLLSERK NSIPFTSSCS SSTPILTTTI TTSPSTASLT NAAHSSSNNN  60
NTNTTNNNTN SEANPSQQNL RCPRCDSTNT KFCYYNNYNL TQPRHFCKTC RRYWTKGGTL  120
RNVPIGGGCR KNKTITANNS SSSGFVKPSP NAMAKAKATL SSELLLNGNP GNFLGSGLLD  180
PELPSNYPNP IFWSSLPQNS HILSLLRGSN STQFHNPNPN PNPIFGIKTE SGLGLDSYGN  240
GAPSNLNGSF SRGNQNHING LFSSGAQDFI PNNGNNNNNS NILELYQRLK SSSNYSYCSN  300
DNPGNTVILG NMVGSSSALS STILDSAPIG GGDNSHFGGY HGLMNSPALI SGWSDIPTLP  360
ININGAYP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714230.11e-132dof zinc finger protein DOF4.7-like
TrEMBLA0A0K9R6D74e-91A0A0K9R6D7_SPIOL; Uncharacterized protein
STRINGXP_010680457.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-34TARGET OF MONOPTEROS 6