PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011729-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Dof
Protein Properties Length: 254aa    MW: 26231.2 Da    PI: 7.7707
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011729-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.5e-372686262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +++ l+cprC s ntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rk  k+s
  AHYPO_011729-RA 26 QQDPLPCPRCSSLNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGSRKTAKRS 86
                     567899**************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-25277IPR003851Zinc finger, Dof-type
PfamPF027011.1E-322984IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6213084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPTEPAERRT VVRAQQMGAP LPPVEQQDPL PCPRCSSLNT KFCYYNNYNF SQPRHFCKAC  60
RRYWTHGGTL RDIPIGGGSR KTAKRSRTSS ASSSAIVASS ATSTSSIGSI LEPIPLSTQA  120
QAQAQTQSQS QLFVSLPSIG GNGGFTSLLS GGGGPTSGFL ALGGFGLGLG LDDVGFGLGR  180
GVWAFPHHDI GPYENCGSVS GDVEGGHGGG IQTGGNRSDT WQMESGEVVG FVGADCFTAL  240
PELAISTTGN GLK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714218.16e-95dof zinc finger protein DOF3.4-like
TrEMBLA0A0K9S2U73e-72A0A0K9S2U7_SPIOL; Uncharacterized protein
STRINGXP_010680466.14e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.17e-35Dof family protein