PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011750-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 293aa    MW: 32444.5 Da    PI: 7.2205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011750-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-1381124855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  AHYPO_011750-RA  81 TERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 124
                      6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-1572135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.92273123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1577135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-1378128No hitNo description
SMARTSM003536.9E-981129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1081124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSHEQNQEND ALLWETQSWV NLSNDTSDNS GGDKGIFPPE LKEENDKKRS RGRGSATKKG  60
KGVNGGKKEG ETSDHEIHIW TERERRKKMR NMFSNLHALL PQLPPKADKS TIVDEAVNYI  120
KTLQSALQRL QKQKLERLQL HGNNSFLFEP SIAATSRLAL LSSRETFIAD QVANNNNNCG  180
GSSSSFCASA CHLPVAMQTW TSSNVVLNLC GNDAQFSVYA PKRDALFTAI CGVLDKYKME  240
VISAHVSSDV DRYVYIIHAR LANGASDQFP EMITVEEVSK QAAGEMILWV LS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690743.11e-142PREDICTED: transcription factor bHLH95
TrEMBLA0A2N9IAL96e-97A0A2N9IAL9_FAGSY; Uncharacterized protein
STRINGXP_010690743.11e-142(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-45bHLH family protein