PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011799-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 282aa    MW: 31441.6 Da    PI: 3.9497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011799-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-081768147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++W+t E+  l+ +v ++G g+Wk I +          R++ +++++wq+ 
  AHYPO_011799-RA 17 KKSWSTKEEMALKLGVLKYGVGNWKFIQEDPEfnkclDSRSDVELQEKWQNM 68
                     679**********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1781269IPR017877Myb-like domain
SMARTSM007175.4E-71671IPR001005SANT/Myb domain
PfamPF002497.9E-61768IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-101768IPR009057Homeodomain-like
SuperFamilySSF466895.01E-121771IPR009057Homeodomain-like
CDDcd116606.87E-132069No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEESNLISDA ISNTEAKKSW STKEEMALKL GVLKYGVGNW KFIQEDPEFN KCLDSRSDVE  60
LQEKWQNMNI EASIPQPAIP DQLNVESNKI AECKQSPKRK MSEMQSEAVV DAEAEWKAED  120
KIEAEAETEA EADVEEKSEA EALVDTEAED KIEAEAATDA EADVEENSEA EAEAEAKTEA  180
EEKKQNMKTE VSMPKPAIQD QESSKVVVVV EAGRFKIKTE EVIDDEKLSG LITDLEKNEP  240
EHAGYCKDLE KLLECDEKAD EILAYANEIM DRPLEDSESS N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-13MYB_related family protein