PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011801-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 221aa MW: 24977.3 Da PI: 4.57

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011801-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	6	55	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++WTteE++ l ++v+++G g W I + + R+ +k++w++ AHYPO_011801-RA 6 NKWTTEEEKALREGVAKHGVGKWIYILNDPQfshilRSRCNVALKDKWRN 55 69***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.636	1	61	IPR017930	Myb domain
SMART	SM00717	0.0014	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-7	6	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.37E-15	6	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-12	6	64	IPR009057	Homeodomain-like
CDD	cd11660	7.42E-17	7	58	No hit	No description
SMART	SM00717	35	63	119	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MGNPNNKWTT EEEKALREGV AKHGVGKWIY ILNDPQFSHI LRSRCNVALK DKWRNINRAT 60 QKHKESWSTK EETALGALGE LKYGINNSKS IQEDPEFKKC SDSGSDVELQ EKWQNMKAEA 120 SMPQPAIQDQ LNFEFNHTAA RKRKMSEMQS EFDANAQAET DAEEESEAKA EAETEAEAKR 180 EAGPSQSLLQ KMPEAESDEE AEVNAESETE NKEENSERKL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	2e-20	telomere repeat binding factor 3

Link Out ? help Back to Top
Phytozome	AHYPO_011801-RA