PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011857-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 508aa    MW: 56666.6 Da    PI: 5.7186
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011857-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-1189110526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+f+++tG Ck+G +C+F+H+
  AHYPO_011857-RA  89 DCSFYMKTGSCKFGQSCRFNHP 110
                      7********************9 PP
2zf-CCCH27.17.2e-09140161526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f+  G C+yGd C+++H+
  AHYPO_011857-RA 140 VCKYFRTPGGCRYGDACRYNHP 161
                      6********************9 PP
3zf-CCCH34.43.6e-11176197526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C f++rtG C yG++C+F+H+
  AHYPO_011857-RA 176 ECTFYMRTGSCGYGANCRFHHP 197
                      6********************9 PP
4zf-CCCH34.53.6e-11315339226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++f+rtG Cky + C+++H+
  AHYPO_011857-RA 315 GQPNCDYFMRTGDCKYRAACRYNHP 339
                      5799********************9 PP
5zf-CCCH28.33.1e-09395421127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C ff++tG Ck+ + C+F+H++
  AHYPO_011857-RA 395 PGQPECEFFMKTGNCKFKSACRFHHPK 421
                      5789*********************96 PP
6zf-CCCH27.45.7e-09442466226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      + ++Cr++   GtCkyG +C F H+
  AHYPO_011857-RA 442 GSKICRNYELQGTCKYGRNCLFDHP 466
                      5689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.55884112IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-484111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-688112IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-889110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-590111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281135163IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5140161IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-7140161IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5173198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6175199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319176199IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9176197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5177196IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.07313341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5316341IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7316339IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5394421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859394422IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-7396421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5398423IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6440467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925440468IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6442466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6443467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-6444465IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGTCEVISPC LETQDEIQSG ISISSNGTYH EDHQSTEVEI LAKQLESVVL QANLKFEEEN  60
EEEEVDEQQE EEEEEGKSHI YPLRPYATDC SFYMKTGSCK FGQSCRFNHP TERAFQPVQD  120
QEKGADENYG ATVVDTGKIV CKYFRTPGGC RYGDACRYNH PTEISENEGP ELNFLECTFY  180
MRTGSCGYGA NCRFHHPDPS AAKESQPRNS LPNGAYVRGG NNLSAMYPGD TMQASGISRG  240
ITDLSNGISS LNGLPYAGIN YHQAMSPNAG WDQQKTQLNL KTHLPHQMVS ISKKQDPSTL  300
YEQVMQSEEF PVRLGQPNCD YFMRTGDCKY RAACRYNHPV NRSSKLQLPL LSTNSPYTKS  360
KNSDFLGLTS GNIRRNGPSS HQQHQMSNEQ YPERPGQPEC EFFMKTGNCK FKSACRFHHP  420
KDRISTSSPS ALNQTGLPLR PGSKICRNYE LQGTCKYGRN CLFDHPDNTS PAVSVGSANG  480
EDYRPSNPVI AADLEPSKSD WGDDWVM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674845.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A0K9QFH90.0A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-60C3H family protein