PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011891-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 175aa    MW: 20358.6 Da    PI: 7.7279
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011891-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.78.2e-16100162163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+e++r +r+++NRe+ArrsR+RK++++e+L+  v +L a N++L+++l+   +  ++l +e+
  AHYPO_011891-RA 100 EQEIRRLKRMISNRESARRSRLRKRKQLENLQSQVLQLLAANHQLAEKLNLVMDSNYELIQEN 162
                      7899**************************************************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-1093155No hitNo description
SMARTSM003381.4E-14100164IPR004827Basic-leucine zipper domain
PfamPF001706.2E-14100162IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.277102165IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10104157No hitNo description
CDDcd147022.16E-14105152No hitNo description
PROSITE patternPS000360107122IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MYQIDEDKGF QILSTTPKHQ SNNTLNQSQF TMSSNPNNKF ITNLHSYIPL HDLTSLNPKF  60
DTNSSNPNNS IMNPNPNPSP NNHILSSDDQ DQASKEQNEE QEIRRLKRMI SNRESARRSR  120
LRKRKQLENL QSQVLQLLAA NHQLAEKLNL VMDSNYELIQ ENTRLRDESI CLRNE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRSRLRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686844.17e-79PREDICTED: G-box-binding factor 3
TrEMBLA0A0K9RMA64e-69A0A0K9RMA6_SPIOL; Uncharacterized protein
STRINGXP_010686844.13e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.14e-08basic leucine-zipper 43