PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011912-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 81aa MW: 9375.08 Da PI: 11.7543

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011912-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.9	2.2e-28	19	69	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH++Fv+ave+LGG AtPk il++m+vkg+tl+hvkSHLQ++R+ AHYPO_011912-RA 19 PRLRWTDDLHRCFVRAVERLGG---ATPKMILQIMGVKGITLSHVKSHLQMFRS 69 8*****************99...89************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-28	15	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.114	15	72	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-24	19	70	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-8	20	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MEMTKERSGI RPYVRSNSPR LRWTDDLHRC FVRAVERLGG ATPKMILQIM GVKGITLSHV 60 KSHLQMFRSM KQEQMIRGNF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-16	20	71	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-16	20	71	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-16	20	71	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-16	20	71	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106903.1	1e-38	PREDICTED: uncharacterized protein LOC104901034
Swissprot	Q700D9	2e-24	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1R3H3F7	6e-35	A0A1R3H3F7_9ROSI; Uncharacterized protein
STRING	XP_010686880.1	4e-38	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_011912-RA