PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011939-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 112aa MW: 12450.3 Da PI: 8.203

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011939-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106	3.1e-33	7	100	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+apy+ ++ ++f +vhk+FGasnv++ll +lpe+ r +a+ +l +eA ar+rdPvyG+v+ i +lqqq + e AHYPO_011939-RA 7 SCGACKFLRRKCTSECVFAPYYSYNEaVAHFGAVHKVFGASNVSRLLLHLPEQFRGEAALTLSFEALARIRDPVYGCVAYIYALQQQPIDATRE 100 6*******************998856********************************************************98766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.506	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-32	7	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MTGISTSCGA CKFLRRKCTS ECVFAPYYSY NEAVAHFGAV HKVFGASNVS RLLLHLPEQF 60 RGEAALTLSF EALARIRDPV YGCVAYIYAL QQQPIDATRE NRSLDYVNLM F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-29	3	105	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-29	3	105	7	105	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691088.1	1e-57	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9LHS8	4e-44	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A2I0KV46	8e-49	A0A2I0KV46_PUNGR; Uncharacterized protein
TrEMBL	B9HT79	3e-48	B9HT79_POPTR; Uncharacterized protein
STRING	XP_010691088.1	4e-57	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-46	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	AHYPO_011939-RA

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]