PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012020-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 249aa    MW: 26394.5 Da    PI: 8.3752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012020-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000317496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC  C+k Fs+   L  H  +H
  AHYPO_012020-RA 74 YKCAVCDKEFSSYQALGGHKASH 96
                     9***********99999998887 PP
2zf-C2H211.40.001124143120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C++C+ksF++   L  H 
  AHYPO_012020-RA 124 HVCSICNKSFPTGQALGGHK 143
                      79*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-137398IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-1073146No hitNo description
PROSITE profilePS501579.95174101IPR007087Zinc finger, C2H2
SMARTSM003550.0367496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PfamPF139122.6E-13124148IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411124146IPR007087Zinc finger, C2H2
SMARTSM003550.038124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTLEPLNSST PSLNTLENPI LKKKRSKRPR FDDSSSPSDE EYLALCLIML ARGDSTATTT  60
AKNTTQTTAT AAVYKCAVCD KEFSSYQALG GHKASHRKPA TTTLPDAIAT NTATSYPSTT  120
GKSHVCSICN KSFPTGQALG GHKRCHYEGS LNFNSSKLSS VVANGNSAVM SKINSAAVKS  180
AADDKINSAA ANSATSTVTH SRVMDFDLNM PAVPDNLTVD FDGVIDHVSF DQEVESPHPS  240
KKSRPFTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027LKKKRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724863.11e-82zinc finger protein ZAT10-like
TrEMBLA0A0K9R2163e-73A0A0K9R216_SPIOL; Uncharacterized protein
STRINGXP_010687351.12e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-40salt tolerance zinc finger