PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012046-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 795aa    MW: 87105.7 Da    PI: 8.7677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012046-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-07468489426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++Cr++++ G C+ G +CkF+H+
  AHYPO_012046-RA 468 PPCRHYLK-GRCQEGVKCKFSHD 489
                      79******.*************7 PP
2zf-CCCH19.71.5e-06523543525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C+++  tG+C +Gd+C F+H
  AHYPO_012046-RA 523 PCNNYVSTGFCVRGDSCLFSH 543
                      7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.793464491IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011465490IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5467489IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5468489IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4469489IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502493520IPR000571Zinc finger, CCCH-type
SMARTSM003560.0096493519IPR000571Zinc finger, CCCH-type
SMARTSM003560.4521545IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5522545IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4523543IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.235523546IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MKASNGDKDD LIKLFGSPSP RLPLPSNSFN TIVKIFSLFS NDNPFSDYAH LPEYQSLYGV  60
NRSNPKRHKS GIEQDDSFML RGNKETPNAL VEPAIVEGQR SSCNIGINSD SVAEVVCKDD  120
SFIALQARDK MASNAKGTHA WIDEDALTGI EKFLMNESDD TDLLGLPEKD INFDFLNAFG  180
STLDFCNNTT SSEIGKVHLD GNIKDDVSGE VRRKEFDGDL PVDREISNPE EAMNQHSSSG  240
LEYPLLSKER EFSKEKAHDK LLEQEKVSFA AQRCKKGEVV SISNVVDRVG TRNKSNVATK  300
GKAKKAPLKG VKLGKNKHTC INTGALNSTK SGGANLLTNR KMMEQNAHRN IGKIITRKTT  360
SVSADILNVI QKIGAEVHVE GRHSAVEETD VSLAISWKVD SSNNRKSEGK KAEEEDGWGG  420
RWGVEYHLVR QISWWESRQK RKKRAEMNKK LGVKRLKLKT DLKPKVIPPC RHYLKGRCQE  480
GVKCKFSHDV IPLTKSQPCC HFARNGCMKG DECPYDHQLS KYPCNNYVST GFCVRGDSCL  540
FSHKGSSSEG SKCETHSAQQ VDGSNPKQQL NVSTSVASGS ATPNIVQDDL AKRTSQPVSA  600
PKGFSFLSFG KSSVKESAKP KESELTQKIT DNVALTHGLL DSKKNNDDAN TSNLSRSSLT  660
PTSHKEIDSP ASVRLPCVSS GSKSQEAATL STNCRINSVI TDKETANKPD ILTSGQPVVG  720
ELRSTPTTAR SGLLSTLSFA ANFESRIKMN SATPSKELDK NEGTKDEAEC RQNEQSKTSA  780
ILEFLYSGGN SNRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299305KGKAKKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-