PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012176-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 250aa    MW: 26987.3 Da    PI: 4.5264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012176-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1752103156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++ge
  AHYPO_012176-RA  52 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKGE 103
                      68*****998.**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1152103IPR001471AP2/ERF domain
SMARTSM003801.2E-3253116IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2053111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3053111IPR001471AP2/ERF domain
PROSITE profilePS5103222.2653110IPR001471AP2/ERF domain
PRINTSPR003671.1E-85465IPR001471AP2/ERF domain
CDDcd000184.13E-3054112No hitNo description
PRINTSPR003671.1E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEIQIPANNI ESSPTSSPST ESESTRLNSP NSNSDPVKTP TKRARNSGSK HPVYHGVRMR  60
NWGKWVSEIR EPRKKSRIWL GTFPNPEMAA RAHDVAALSI KGESAILNFP ELAGLLPRPI  120
SLSPRDVQAA ATKAASMEIN FDDIVVSSSG LSSSSPYLSS SCSSLSSMVS AMELGNSDEL  180
SEIVELPSLG PVDDLGTEFV YNVEIGSGMG MGMDGWVYDS PPWMQCMQDF GLVPQNVVTN  240
GFEGLLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1944111573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715190.11e-94ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0K9QU221e-82A0A0K9QU22_SPIOL; Uncharacterized protein
STRINGXP_010668364.12e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]