PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012201-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 129aa    MW: 14555.2 Da    PI: 4.8785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012201-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.81.1e-19754149
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                     +ppGfrFhPtdeelv++yL+kk++++k++l +vik+vd+yk+ePwdL+ 
  AHYPO_012201-RA  7 VPPGFRFHPTDEELVDYYLRKKIAATKIDL-DVIKDVDLYKIEPWDLQD 54
                     69****************************.9***************83 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-19570IPR003441NAC domain
PROSITE profilePS5100518.5347128IPR003441NAC domain
PfamPF023651.8E-9861IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKIA ATKIDLDVIK DVDLYKIEPW DLQDWKALDK  60
FVASQFSGDE CVPSHPNKDS NYSNCLTFRA SEHMNAVISP NSSKQDVGCP SDQYASTSTS  120
SCQIDMWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-146541462Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2QY601e-34A0A0B2QY60_GLYSO; NAC domain-containing protein 7
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.17e-30NAC 007