PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012262-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 407aa    MW: 44657.5 Da    PI: 4.9893
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012262-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32e-05544639
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ ++e++   +C+++  +lC +C  + H+       H++
  AHYPO_012262-RA  5 CDYCGEHRSMVYCRSDTAFLCLSCDRNVHSAnalskrHSR 44
                     999**999*********************65667777765 PP
2CCT63.66.1e-22349392144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  AHYPO_012262-RA 349 RTEAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 392
                      89***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
CDDcd000212.04E-7447No hitNo description
SMARTSM003364.1E-7447IPR000315B-box-type zinc finger
PfamPF062039.2E-17349391IPR010402CCT domain
PROSITE profilePS5101715.497349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGYLCDYCGE HRSMVYCRSD TAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPALVRC  60
IDEGLSLCQK CNWDGHDENT SFHKQQSIDY YTGCPSASEL SKIWSFILDV PLPSSDNSTC  120
QEGLGLLSIS ESGTKNCMDH VDKNDNQAAV ADGNDLNESI VWSGRASSPE LRLRECPDQP  180
GCTESSQMFH SSYRVVATSE DDLFADMDMD EVDINFENYD ELFGVTLTHS EQLLENGGIN  240
SLFSRHDMRI ADSNRQGGLG AEGASAGITG QMQPACSNAA SADSIMSVKT EPNIGFASKQ  300
AHSGLSFSGL TGESSGGDYQ DCGASSLLLL GEPPWCPQGP ESSNQSTIRT EAVMRYKEKK  360
KTRKFEKRVR YASRKARADV RKRVKGRFVK AGDAYDYDPL NDTMSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745942.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_021745943.10.0zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-137COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A061DL861e-179A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGXP_010689670.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-112B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]