PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012273-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 93aa MW: 10649.8 Da PI: 4.3641

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012273-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	26	71	1	44
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 + WT+eE +++ + ++l ++ ++ Ia +++ g+t q+k ++ AHYPO_012273-RA 26 KEEWTKEENKIFENSLAELDMNcvdFFEQIALRLP-GKTTQQIKKHY 71 578******************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-6	20	76	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.075	21	75	IPR017877	Myb-like domain
SMART	SM00717	3.9E-6	25	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.0E-9	25	84	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-6	26	72	IPR001005	SANT/Myb domain
CDD	cd00167	0.00106	36	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MNSNSSSQNS SKTSPVKLTE ENQKEKEEWT KEENKIFENS LAELDMNCVD FFEQIALRLP 60 GKTTQQIKKH YEALVDDIAR IESGEFDSLI MY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098014.1	1e-18	transcription factor SRM1-like
Refseq	XP_028074066.1	9e-19	transcription factor DIVARICATA-like
TrEMBL	A0A2G9GXB3	3e-15	A0A2G9GXB3_9LAMI; Zuotin
TrEMBL	A0A2G9HFK1	2e-15	A0A2G9HFK1_9LAMI; Zuotin
TrEMBL	U5D6S9	2e-15	U5D6S9_AMBTC; Uncharacterized protein
STRING	ERN17112	3e-16	(Amborella trichopoda)
STRING	XP_010680852.1	1e-15	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18328.1	8e-11	RAD-like 4

Link Out ? help Back to Top
Phytozome	AHYPO_012273-RA