PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012309-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

ZF-HD

Protein Properties

Length: 251aa MW: 28447.8 Da PI: 6.7917

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012309-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.6	2.5e-32	44	97	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY+eClkNhA+ +GghavDGCgEfmp g eg+ +al+CaAC+CHRnFHR+e AHYPO_012309-RA 44 AVRYRECLKNHAVGIGGHAVDGCGEFMPG-GIEGSLDALRCAACNCHRNFHRKEL 97 69************************9.999******************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.3E-29	45	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-30	46	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-23	46	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.225	47	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.6E-30	177	249	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-18	178	248	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.5E-24	187	243	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MMEFEPSEDH EEEEMEEEEE EEEESEMATI TPTLKKHQVT PLAAVRYREC LKNHAVGIGG 60 HAVDGCGEFM PGGIEGSLDA LRCAACNCHR NFHRKELFSP DNNHQLTLYS PTHPRPHHPQ 120 QIYQFYPYNR TTPPAYHVIG GQSQRALALP SPTTMAAPNN NVNNNINNNR QQEIVGSGEG 180 GSNGSGKKRF RTKFTQEQKD KMLSLAERLD WKIQKQDDVL VHQFCNETGV KRHVLKVWMH 240 NNKHTLGKKP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	188	245	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681042.1	4e-97	PREDICTED: zinc-finger homeodomain protein 1
Swissprot	A2Z259	5e-69	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	6e-69	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0D2MJ39	2e-78	A0A0D2MJ39_GOSRA; Uncharacterized protein
STRING	XP_010681042.1	2e-96	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-61	homeobox protein 22

Link Out ? help Back to Top
Phytozome	AHYPO_012309-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]