PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012321-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17725.2 Da    PI: 9.8964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012321-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-22350249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+n s rqvtfskRr g++KKA+E+++LC++e+ +i+fs+ +k++ +
  AHYPO_012321-RA  3 RIKNPSHRQVTFSKRRLGLFKKASEICTLCGVEAIIIVFSPGQKIFSF 50
                     8******************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.619154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-24173IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-21153IPR002100Transcription factor, MADS-box
PfamPF003194.2E-23350IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MARIKNPSHR QVTFSKRRLG LFKKASEICT LCGVEAIIIV FSPGQKIFSF GHPNVESIVN  60
RYLNRTPRPQ TSNNNVKNED SHVEQSSTTM GELNSQLTKI LDLLEAEKNR GENFNSLRRK  120
SSQWWWEAPI DKLGLHELEI LGASMEDLKK NIYIA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735544.13e-82agamous-like MADS-box protein AGL62
TrEMBLA0A0K9QCA56e-75A0A0K9QCA5_SPIOL; Uncharacterized protein
STRINGXP_010692431.13e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-47AGAMOUS-like 62