PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012332-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 201aa    MW: 22490.3 Da    PI: 5.0703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012332-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-173888155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +++ +rWv+e+r p  n+ ++r++lg++ tae+Aa+a++ a+++l+g
  AHYPO_012332-RA 38 PVYRGVR-NRNGNRWVCEVRAP--NN-KTRIWLGTYPTAEMAARAHDVAALALRG 88
                     68****9.888*******9998..33.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-133888IPR001471AP2/ERF domain
SMARTSM003801.3E-2339102IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-203998IPR016177DNA-binding domain
PROSITE profilePS5103221.2983996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-303998IPR001471AP2/ERF domain
CDDcd000184.89E-274098No hitNo description
PRINTSPR003671.1E-74051IPR001471AP2/ERF domain
PRINTSPR003671.1E-76278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDLNNGGRCT HSDDEVILAA SCPKKRAGRK KFKETRHPVY RGVRNRNGNR WVCEVRAPNN  60
KTRIWLGTYP TAEMAARAHD VAALALRGRM ACLNFADSAW RLRVPLSTDT RDIQKAAAEA  120
AEAFRGEELE VNVGESSGTK DNVEMEVEGS RRDVEVRKSG DDVLEEYMDE EEVFDMPGLL  180
LEFFLEVDSP FVVVGKLEKD *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676556.29e-79PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ937e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0B5EA014e-77A0A0B5EA01_SUASA; Dehydration-responsive element binding protein
STRINGXP_010676556.16e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-42C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]