PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012349-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 334aa    MW: 36214.1 Da    PI: 4.9954
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012349-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36341252102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++lisw+e+g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k ll+
  AHYPO_012349-RA  34 FLTKTYQLVDDPAVDDLISWNEDGSSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKALLR 118
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  AHYPO_012349-RA 119 DIQRRKI 125
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5930123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3631123IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3831123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-213457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-217284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-218597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPPFPVEQTG ESNSAGTAVG NSGDSQQRTL PTPFLTKTYQ LVDDPAVDDL ISWNEDGSSF  60
IVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFANDCFK RGEKALLRDI  120
QRRKISPVNP PNVTVVSPVV TPATVTIAAP PPSVLRTVSP SNSGDEQVHS SNSSPSPGTV  180
TVQRLTACTT TTAEILEEND RLRRENSNLS QELNHLRGLC NNILSLMSNY AAGQQETGGL  240
PEGRPLDLLP AKAIPIEVEP CGVSSGGATG SGSSKGGEKM EEYDDEGCPC PRLFGVSIGS  300
KRVRREDNEE NRGSREGSDP VHTQQQEQQS SGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-273412329129Heat shock factor protein 1
5d5v_B4e-273412329129Heat shock factor protein 1
5d5v_D4e-273412329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863251.11e-172heat stress transcription factor B-2b
SwissprotQ9T0D36e-96HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0K9QAJ41e-171A0A0K9QAJ4_SPIOL; Uncharacterized protein
STRINGXP_010676525.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-91HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]