PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012393-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 379aa    MW: 42424 Da    PI: 4.8457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012393-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1990140155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a++ ++g
  AHYPO_012393-RA  90 CKFRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTAVEAALAYDEAARIMYG 140
                      79*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-3290150No hitNo description
PfamPF008477.0E-1390140IPR001471AP2/ERF domain
PROSITE profilePS5103221.36491148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3091149IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-2191149IPR016177DNA-binding domain
SMARTSM003802.5E-3791154IPR001471AP2/ERF domain
PRINTSPR003673.8E-992103IPR001471AP2/ERF domain
PRINTSPR003673.8E-9114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVSEIFERMG TFDYNKASNP PSPSSSLSFD YTRKRKTRRR RDESLVETLA KWKEINSKLN  60
DGVKPVRKAP AKGSKKGCMR GKGGPENWLC KFRGVRQRTW GKWVAEIREP NRGKRLWLGT  120
FPTAVEAALA YDEAARIMYG SNARLNLPDH PSSVESMEEY RDNSTTTTTA SCTTGSTTSS  180
DTRSDVDRFG KISGIAVKKE DGEGDSLTDG KNEPFLSPVK EEMKQELEIG EGGIDINDYL  240
QNLTVDEMFD VDELLGAINA GPVSPADGLM NLGFDTFKTQ VENNSIQLEK PEEWSDLNPN  300
SDFLQQFHSQ DDANLFESLH YNDQDHKRLD YGFDLIPDQQ ENDHGGKLKI KKSGRQESGP  360
AADELHFVNL ADLGMSADF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1792148360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136TRKRKT
23441RKTRRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769253.11e-125dehydration-responsive element-binding protein 2C-like isoform X1
TrEMBLA0A0K1LXK21e-105A0A0K1LXK2_9CARY; Dehydration responsive element binding transcription factor 2A
STRINGXP_010692919.11e-121(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-37ERF family protein