PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012412-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 338aa    MW: 37734.2 Da    PI: 9.6759
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012412-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.8e-3280133255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +F++ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  AHYPO_012412-RA  80 PRLRWTPDLHLCFIQAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 133
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-3076134IPR009057Homeodomain-like
PROSITE profilePS5129413.34676136IPR017930Myb domain
SuperFamilySSF466891.2E-1478134IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-2480135IPR006447Myb domain, plants
PfamPF002491.3E-981132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MIRARSGSTL EGSKSSLSNS KIDDDSIEEV DDNSNHSNSN SKLLKVNGSS SSSSTVEESD  60
KKTLSSSSGS VRPYNRSKMP RLRWTPDLHL CFIQAVERLG GQERATPKLV LQLMNVKGLS  120
IAHVKSHLQM YRSKKIDESN QAMSNQGVFM DGRDNIYDLS QLPMLQAYNN QRSSFNLSNS  180
QANVHDFQGK FPNWITQQTL KKDPMSQTNE SPTSKSSMEF DLAIRSISGS AEGREKSNSL  240
NFLENDSKIE KNQKETFSHL KRKAMDLDLN LTLASKDTIF NGLTKKFAKH NEVLGSELTL  300
SLQHPSPLFS SRLDQDKFIS KFKEGNEQAR TSLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-1981135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1981135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1981135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1981135357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1981135458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732658.11e-126two-component response regulator ARR1-like
TrEMBLA0A0J8BEJ51e-105A0A0J8BEJ5_BETVU; Uncharacterized protein
STRINGXP_010693076.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.16e-47G2-like family protein