PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012413-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 260aa MW: 29122 Da PI: 5.9688

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012413-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	21	7.6e-07	81	97	2	18
G2-like 2 prlrWtpeLHerFveav 18 prlrWtp+LH +Fv+a+ AHYPO_012413-RA 81 PRLRWTPDLHLCFVHAM 97 8**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-6	77	100	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MSNLEGAKTS LSNDEIDDEF EDDKADEEAE EVDDNNNNNS NNSELIKVNG SSSSTSTVDE 60 DDKKKSASSG SVRPYNRSKL PRLRWTPDLH LCFVHAMYRS KKIDELNQAA MSNQGIFTDG 120 RDNIYNLSQL PIYGSDTSYR SHSSQIYAPY NSQASINLFQ GQLSNWRIHQ TLKKATPTSQ 180 PYCSSSSPSP SYQSTSIKPK SNMELNLTIS PILEPLKPSK DHLKRKSIDL DLSLALAPKH 240 ENNYNDQLPT KNTKNKEILG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021732658.1	3e-85	two-component response regulator ARR1-like
TrEMBL	A0A0K9R1I5	1e-70	A0A0K9R1I5_SPIOL; Uncharacterized protein
STRING	XP_010693076.1	1e-58	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-15	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_012413-RA