PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012550-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 122aa    MW: 14262.2 Da    PI: 4.8142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012550-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-1614105198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk  +    l +++l lpk f++++g++   s t++l  + +++W++ l   ++ ++ +l++ W +Fv+   L  g f+vFk++g+s+f  +v
  AHYPO_012550-RA  14 FFKFILDQPRLDLQQLELPKLFMNTYGND--LSDTISLILPPNKVWKFDL--VRQNNKAYLQNDWPKFVEFYSLSHGHFLVFKYQGNSCF--NV 101
                      8888999999999*************988..888****************..88888899******************************..77 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  AHYPO_012550-RA 102 VIFD 105
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-1812106IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-1213105No hitNo description
PfamPF023629.5E-1314104IPR003340B3 DNA binding domain
SMARTSM010192.2E-1014107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-1914105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.54814107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEGDDNDKWP IASFFKFILD QPRLDLQQLE LPKLFMNTYG NDLSDTISLI LPPNKVWKFD  60
LVRQNNKAYL QNDWPKFVEF YSLSHGHFLV FKYQGNSCFN VVIFDLGASE IDYPCHYETG  120
R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731118.16e-46B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A1Q3DFU36e-28A0A1Q3DFU3_CEPFO; B3 domain-containing protein
STRINGXP_010681213.11e-43(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein