PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012623-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WRKY

Protein Properties

Length: 473aa MW: 52546.1 Da PI: 6.9131

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012623-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.6e-30	174	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ AHYPO_012623-RA 174 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 233 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.6E-32	159	235	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	166	235	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	169	235	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	174	234	IPR003657	WRKY domain
Pfam	PF03106	5.3E-27	175	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGEVMEENQR LKQHLNKIMK DYQILQNKFN EISQQHPKPT PIDDHNEEEE LVSLSLGRSL 60 SLDSNKNNIK LSKITTNASS SNQLALDDHD EDAKERRLDL GLEYKGINGL SMGDCTQTLI 120 PSSSPENSLD EIKDGEETWA PSKVSNKDDN DVVQQPPMKK ARVSVRVRCD TPTMNDGCQW 180 RKYGQKIAKG NPCPRAYYRC TVAPSCPVRK QVQRCAEDMS ILITTYEGTH NHPLPVSATA 240 MASTTSAAAY MLMSKSSSSS NPLGSNPSTS TLSKPTEHEG FKFNFNFPDN SKQNPIYLPN 300 SSTFCPNPTN PTVTLDLTST SLPSTNQQNI GQNYGSRYYS STNLAFNFSD HDNSSNYNNT 360 HLVSWPNLPK TQINPLIIGS STQINSHQNP YNNQINMFQN RLNHNHNHNP SINHDSLPDS 420 ITQAAKVLTS DPNFHSILKA TLSSFISGNN GNVGNNVINS STTTFSDTMI KWN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGEVMEENQR LKQHLNKIMK DYQILQNKFN EISQQHPKPT PIDDHNEEEE LVSLSLGRSL  60
SLDSNKNNIK LSKITTNASS SNQLALDDHD EDAKERRLDL GLEYKGINGL SMGDCTQTLI  120
PSSSPENSLD EIKDGEETWA PSKVSNKDDN DVVQQPPMKK ARVSVRVRCD TPTMNDGCQW  180
RKYGQKIAKG NPCPRAYYRC TVAPSCPVRK QVQRCAEDMS ILITTYEGTH NHPLPVSATA  240
MASTTSAAAY MLMSKSSSSS NPLGSNPSTS TLSKPTEHEG FKFNFNFPDN SKQNPIYLPN  300
SSTFCPNPTN PTVTLDLTST SLPSTNQQNI GQNYGSRYYS STNLAFNFSD HDNSSNYNNT  360
HLVSWPNLPK TQINPLIIGS STQINSHQNP YNNQINMFQN RLNHNHNHNP SINHDSLPDS  420
ITQAAKVLTS DPNFHSILKA TLSSFISGNN GNVGNNVINS STTTFSDTMI KWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-20	165	235	8	77	Probable WRKY transcription factor 4
2ayd_A	2e-20	161	235	1	74	WRKY transcription factor 1
2lex_A	2e-20	165	235	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761665.1	1e-145	LOW QUALITY PROTEIN: probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-104	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A0K9R6C4	1e-127	A0A0K9R6C4_SPIOL; Uncharacterized protein
STRING	XP_010678574.1	1e-136	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-60	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	AHYPO_012623-RA

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]