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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AHYPO_012657-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family | C3H | ||||||||
| Protein Properties | Length: 2011aa MW: 219652 Da PI: 7.0274 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 23.5 | 9.6e-08 | 1987 | 2009 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C+ f+++G+Ck G++Ck+ H+
AHYPO_012657-RA 1987 RVVCK-FYESGYCKKGASCKYLHP 2009
67899.8999*************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57903 | 1.15E-7 | 68 | 144 | IPR011011 | Zinc finger, FYVE/PHD-type |
| Gene3D | G3DSA:3.30.40.10 | 4.9E-9 | 93 | 151 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SMART | SM00249 | 1.1E-7 | 99 | 145 | IPR001965 | Zinc finger, PHD-type |
| CDD | cd15568 | 3.79E-18 | 99 | 144 | No hit | No description |
| PROSITE pattern | PS01359 | 0 | 100 | 160 | IPR019786 | Zinc finger, PHD-type, conserved site |
| SMART | SM00151 | 4.6E-4 | 305 | 397 | IPR019835 | SWIB domain |
| SuperFamily | SSF47592 | 4.14E-20 | 317 | 394 | IPR003121 | SWIB/MDM2 domain |
| Gene3D | G3DSA:1.10.245.10 | 2.1E-25 | 317 | 396 | IPR003121 | SWIB/MDM2 domain |
| Pfam | PF02201 | 2.9E-14 | 321 | 392 | IPR003121 | SWIB/MDM2 domain |
| SMART | SM00719 | 2.5E-36 | 452 | 562 | IPR004343 | Plus-3 domain |
| PROSITE profile | PS51360 | 25.546 | 452 | 585 | IPR004343 | Plus-3 domain |
| SuperFamily | SSF159042 | 9.68E-29 | 453 | 582 | IPR004343 | Plus-3 domain |
| Pfam | PF03126 | 8.6E-20 | 457 | 560 | IPR004343 | Plus-3 domain |
| SuperFamily | SSF55277 | 9.29E-16 | 812 | 872 | IPR003169 | GYF domain |
| PROSITE profile | PS50829 | 14.187 | 816 | 870 | IPR003169 | GYF domain |
| SMART | SM00444 | 9.6E-12 | 817 | 872 | IPR003169 | GYF domain |
| Gene3D | G3DSA:3.30.1490.40 | 5.7E-16 | 818 | 873 | IPR003169 | GYF domain |
| Pfam | PF02213 | 2.2E-9 | 818 | 863 | IPR003169 | GYF domain |
| PRINTS | PR01217 | 3.1E-12 | 1498 | 1519 | No hit | No description |
| PRINTS | PR01217 | 3.1E-12 | 1519 | 1535 | No hit | No description |
| PRINTS | PR01217 | 3.1E-12 | 1538 | 1555 | No hit | No description |
| PRINTS | PR01217 | 3.1E-12 | 1558 | 1583 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 1983 | 2008 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.802 | 1984 | 2010 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-6 | 1985 | 2010 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.97E-6 | 1986 | 2009 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-5 | 1987 | 2009 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0010964 | Biological Process | regulation of chromatin silencing by small RNA | ||||
| GO:0032776 | Biological Process | DNA methylation on cytosine | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| GO:0042393 | Molecular Function | histone binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2011 aa Download sequence Send to blast |
MAEERFTRIL VQALTTVDKG VTNPSLRIID RTPIVQILPD SQIVEAPPQA PKAEIAAVGR 60 KKRGRPPRNP GGVSSPAACS SPVTVNSKKI KKEKEDEDVC FICFDGGNLV LCDYRDCPKA 120 YHPACVKRDE SFFLPNIRWN CGWHLCNFCQ KNALFMCYTC PYSLCKKCVK QADILCVRGN 180 KGFCKTCMTT IMLIENISQG TKEQVQVDFD DTTSWEYLFK VYWIYLKEKE ALTLDELSRA 240 GNPWKVCGVE NSNFQQKRAG TSISNVSDVS SSNVQLEANS LKRRKIRKQP QLQNLDSQNI 300 VDSNVNKKQY LPAADDWATK ELLEFVAHMK NGETSVLSQF DVQALLLDYI RKNNLRDPRR 360 KCQIICDRRL ESLFGKERVG HFEMLKLLEY HFKEESHTNG VIRGAAVDPF TGQLENDEFC 420 GDTLTLSRET RRQTRRKAEE KDLKVKLDSY AAIDVHNINL IYLKRSLLEN IIGDTESFHD 480 KVVGSVVRIR ISSNDQKHDM YRLVRIIGTS KGAEPSKVGD KTGSLMLKIL NLNKIEDIAI 540 DSISDQEFSE DECRRLRQSI KLGLVERMTV GEIQEKAMAL QSVRVNDLLE TEIRRLNHLR 600 DRASEMGHRK EYPLICLMSF SYYISSVLLS YIFFLTPYTL RECVEKIELL KSPEERLRRI 660 QEIPDVHADP KMDPSYGSDD DSGEPDIKKQ DVFVTPKYST SSAKDVTLIS PVRARDMQRE 720 DRTRVQKVSL ENVERNRKSS AKFPARKVES VTRSFEPSHK TERLDAFIGL KEFNNRADLG 780 VSGNCVAKIR CIAPEVSNSA TTISSRMLVS DITELEKIWH YRDPSGKVQG PFCMLLLRKW 840 DSNGFFPADL RVWKITETPD QSILLTDALR KQQSSEPGSH VERHLSLPSF NGGVESDDRK 900 VDFNEQLCCK TEVSSVGEKS NEEGSNKNSA AASDAVHLPM KDCNNLLLSD YQGGNGQSGL 960 DIKARLIESL FDTEEPCSVA TPNGSSETMH LTNFESSHPY NSSKSENVDL ECQAVKSQPS 1020 SPNAVQQDLL NSTPRSNLED SKNLASKNNN LVTSSVSKDL DTGCGTKFSA TQFSDPLSVT 1080 PKMENKDVNG HDTENEHLAV SAGHWHDLGT GKAMSGGIDT SFLPISSVKM ENQCLKPHAI 1140 EHKISVCSEV PGQVSEAIWS TISSETDLSI FPRNNSNMEG TKAHSVENKH GNVSENNFGT 1200 SWSTSGGIVF SNPTSTAAKL ETNGLDTSVE NKTCGGTNLP GHSGNGWSCM SEGIELSDLP 1260 TTSLKMDEAS RNPVLGNKNS EIVNVSRQDS CISWSTASSL VGQEVHLPDV ASEWDAFSSV 1320 HTKTVDDFHS GLVSGSLEVS GDIANPTSHS CQLTIPLCDT SNWQPIELST LGDDSVSDLL 1380 SEVEAMESLR GISFPTSRMN CGQDSIDSGD DCFSPLGGLS PNLNPGKNDT LTSTADMHFH 1440 VHPNITHQSD GSFTIHDPST CILSTGSSAM DQTKPAIVSM PLHNFFSESP MSVVLPPLAS 1500 LPPPQQPPMP SLSPQPLPPP EQPSPPPQQP PLSSPSLQPL PPLKQPPLSS PSPQPLPPPQ 1560 QPPMSSPSPQ PLPPPQQPPM SSPSQQPLPT PQQPPMSSPS QQSLPTPQQP PMSSPSPQPT 1620 PLQQPPMSSP SPQPLALTQK PPMSSPSPQP SPSPQQPPMS SPSPQTLPSP QQPPVPSPSL 1680 QPLPIQQPPT SSTSPQPLPL ASLPAPSPPA SVSMSSPSQP PSIPLPLPPV SSSPPPPPSI 1740 PSTPRPSISL PPYPVSITTQ LPPSSPASLP PPPPPPPKEK LPSPPPQPPS PPPPPKEKLP 1800 SPPPPPQPPP PSPSTLSLNR PLSSHKEGQT GPARSMQHHT KVGRHHQPSH TACIKVTAAD 1860 SRKQGSEKIS TDQEFSVHPN GKFSATDSIL GTPNLHWNTS GPGMAAASVN AHRNSSVGSQ 1920 GTRGSSQTSP RYSSHNLGRH SGSKDRSHHH HGVDSGFSKT RPTSWNRQPS FGGGGGGSSR 1980 PPPRGQRVVC KFYESGYCKK GASCKYLHPS * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4gnd_A | 1e-15 | 86 | 166 | 2 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gnd_C | 1e-15 | 86 | 166 | 2 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gne_A | 1e-15 | 86 | 166 | 2 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gnf_A | 1e-15 | 86 | 166 | 2 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gng_A | 1e-15 | 86 | 166 | 2 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gng_D | 1e-15 | 86 | 166 | 2 | 81 | Histone-lysine N-methyltransferase NSD3 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019105625.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X2 | ||||
| TrEMBL | A0A0K9QZQ0 | 0.0 | A0A0K9QZQ0_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010680076.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding | ||||
| Link Out ? help Back to Top | |
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| Phytozome | AHYPO_012657-RA |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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