PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012667-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SRS
Protein Properties Length: 307aa    MW: 33378.6 Da    PI: 6.332
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012667-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.42.2e-65672273153
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstkl 91 
                       g++sCqdCGnqakkdC+++RCRtCCksrgfdCathv+stWvpa+ rr+r+q+l +  ++++++         +skr+   + +++s+l +t+l
  AHYPO_012667-RA  67 GGSISCQDCGNQAKKDCVYMRCRTCCKSRGFDCATHVRSTWVPASVRRDRHQKLVQHLQHQQEQDqeqmgIGLNSKRR---RDHSSSSLVCTQL 157
                      5789**********************************************7776655554444442433312223333...3456667777777 PP

           DUF702  92 ssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      + ++++++++ s         +P+e+s +a frcv+vss+dd+e+e+aYqtav+igGhvfkGiLydqG+ 
  AHYPO_012667-RA 158 PASDTNTNTTSSFsgpmevgnFPAELSYPATFRCVKVSSIDDSEDEYAYQTAVNIGGHVFKGILYDQGPG 227
                      766655444333356777777***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-6469226IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-2771112IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.3E-26179226IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGFFSLDHN TNTNNSYLWT NHHHHHQEPP LNLSISAVDF EGGNDITRSE DNSNNFMMMR  60
MSSSSSGGSI SCQDCGNQAK KDCVYMRCRT CCKSRGFDCA THVRSTWVPA SVRRDRHQKL  120
VQHLQHQQEQ DQEQMGIGLN SKRRRDHSSS SLVCTQLPAS DTNTNTTSSF SGPMEVGNFP  180
AELSYPATFR CVKVSSIDDS EDEYAYQTAV NIGGHVFKGI LYDQGPGDHH DHPQPGDAGG  240
SGGGETPSGG GNLTMGPTTS VSGTLFEMPT SSSSPVVGYL DPSSYYPLPL NAYLPPGTPF  300
FPYPRP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718103.11e-108protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A0K9QJA89e-81A0A0K9QJA8_SPIOL; Uncharacterized protein
STRINGXP_010679824.16e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-53Lateral root primordium (LRP) protein-related